FastQCFastQC Report
Sun 21 May 2023
EGAF00007944341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521919
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12080.23145353972551297No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10350.1983066337880016No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10010.19179221296791266No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7280.13948524579484556No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7140.13680283722186776No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6920.13258762375004549No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6410.1228159925199121No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6080.11649317231217872No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5890.11285276067742311No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5860.11227795884035646No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5330.10212312638551192No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5280.10116512332373415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)