FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521919
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46050.8823208198973405No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23880.4575422623050703No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11020.21114387481582392No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9030.17301535295706805No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8390.1607529137663124No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7610.14580806600257895No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7310.14006004763191224No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7090.13584483416009No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6540.12530680048053433No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6410.1228159925199121No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6140.11764277598631206No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5740.10997875149208977No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5730.10978715087973422No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5690.109020748430312No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5660.1084459465932453No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5330.10212312638551192No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5300.10154832454844526No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5280.10116512332373415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)