FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences589193
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18150.3080484662920299No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16410.2785165472094882No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16200.2749523500788366No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13530.22963612941769504No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12430.21096652539999627No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11430.19399415811117918No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10090.1712511859441643No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9830.16683837044907188No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8950.15190268723491285No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8710.14782931908559674No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8270.14036147747851724No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7920.13442114892743126No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7910.13425142525454306No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7260.12321938651681198No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7170.12169187346081844No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7040.11948546571327222No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6850.11626071592839698No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6820.11575154490973247No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6780.11507265021817978No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6750.11456347919951526No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6730.11422403185373893No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6580.11167817676041637No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6520.11065983472308735No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6490.11015066370442282No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6250.10607729555510673No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6210.10539840086355404No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6030.10234337475156699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)