FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537594
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16000.29762236929727637No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14260.26525593663619756No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12250.2278671264932272No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9630.17913146352079823No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9150.17020279244187994No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8940.16629649884485317No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8080.15029929649512458No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7740.14397482114755744No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7700.14323076522431427No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6770.12593146500891006No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6590.12258321335431571No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6340.11793286383404576No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.11105034654404625No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5760.10714405294701951No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5450.10137761954188476No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5380.10007552167620919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)