FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511520
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11620.2271660932123866No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11440.2236471692211448No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8970.17535971223021582No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8210.16050203315608383No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6670.13039568345323743No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6080.11886143259305598No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6070.11866593681576479No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6030.11788395370659994No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5900.1153425086018142No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5590.10928213950578668No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5210.10185329996872067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)