FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944348

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944348
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511520
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42190.8247966843916172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15730.3075148576790741No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11660.22794807632155145No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9370.18317954332186423No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8810.17223177979355644No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8550.167148889583985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7590.14838129496402877No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7350.1436893963090397No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6690.13078667500781982No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6310.12335783547075382No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6140.12003440725680327No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.12003440725680327No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5810.1135830466061933No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5730.11201908038786362No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5240.10243978730059432No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5230.1022442915233031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)