FastQCFastQC Report
Wed 31 May 2023
EGAF00007944350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418821
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47721.1393889036127605No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6920.16522571695306587No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5340.12750077001869534No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4630.11054842044692123No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4310.10290792486527657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)