FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458176
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT19850.43323962843972624No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16200.3535759184243609No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG16040.350083810588071No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12890.2813329375611119No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12020.2623446012012851No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10380.22655049587931275No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9270.202323997765051No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8590.18748253946081855No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6510.14208513758904875No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT6320.1379382595334544No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5980.13051753038133818No Hit
TGCCTGGTCCGGACCCCATTCACGACCTTGCTGTTCTTTATACT5830.1272436792848163No Hit
CGGAGATGCTTCCGGACCGCGTTCACGGCCCTGCTGTTCTTTGT5240.114366531638497No Hit
GCGTGGAGATGCTTCCGGACCACGTTCACGACCTTGCTGTTCTT5210.11371176141919262No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4950.1080370861852214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)