FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458176
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49651.0836447129487359No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24300.5303638776365414No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19860.4334578851794943No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16280.35532197234250595No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG16230.3542306886436653No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13010.28395201843832935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12610.2752217488476044No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9080.19817711970945662No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8380.18289914792568795No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6730.1468867858639475No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6620.1444859617264981No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6460.14099385389020813No Hit
CAGCGTGGCCGCGACCGCCAGGATCCACAGC6230.13597394887554126No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5420.11829515295432322No Hit
GGCCGCGACCGTCAGGATCCGCAACAGCAGT5350.11676735577594635No Hit
CGTGGTCGTGATCGTCAGGACCCGCAGCAAC5280.11523955859756949No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5090.11109268054197514No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)