FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445726
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48131.0798113639321019No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13150.2950242974383366No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11100.24903191646886202No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5610.12586207670183028No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5450.12227242745543225No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5210.11688795358583526No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5150.11554183511843599No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4970.11150347971623824No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4720.10589465276874134No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4690.10522159353504171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)