FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450820
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG25920.5749523091255934No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25000.5545450512399628No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG23910.5303668870059003No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG23850.5290359788829244No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22920.5084069029767978No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14530.32230158378066637No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12270.2721707111485737No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11070.2455525486890555No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10970.24333436848409568No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7940.17612350827381215No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7600.16858169557694866No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC7440.16503260724901292No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7430.1648107892285169No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7320.1623707910030611No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7310.16214897298256511No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7270.16126170090058117No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7270.16126170090058117No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7240.1605962468390932No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7200.15970897475710927No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7140.15837806663413337No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA7070.15682534049066146No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7060.15660352247016548No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6940.15394170622421366No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6860.15216716206024578No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6500.1441817133223903No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6390.14174171509693448No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6280.13930171687147863No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5940.13175990417461514No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5650.12532718158023157No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5340.11845082294485604No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5150.11423628055543232No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5000.11090901024799255No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG4940.10957810212501665No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT4810.10669446785856883No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4760.1055853777560889No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4760.1055853777560889No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG4680.10381083359212101No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4670.10358901557162505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)