FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473680
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16100.33989191015031245No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14750.31139165681472725No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13530.28563587231886506No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8710.18387941226144233No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8390.17712379665597028No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7790.1644570173957102No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7640.16129032258064516No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7080.14946799527106908No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6800.14355683161628102No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6500.137223441986151No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6350.13405674717108595No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6080.12835669650396894No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6060.12793447052862691No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5940.12540111467657492No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5690.12012328998479986No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5520.11653436919439285No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5190.10956764060124978No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5160.1089343016382368No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5090.10745651072453977No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4750.10027866914372571No Hit

[OK]Adapter Content

Adapter graph