FastQCFastQC Report
Sun 21 May 2023
EGAF00007944358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473680
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49991.0553538253673367No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37070.7825958452964027No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14640.30906941395034626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11780.24869109947643978No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8620.1819793953724033No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7980.1684681641614592No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7760.16382367843269718No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6980.14735686539435908No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6840.14440128356696505No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6720.14186792771491302No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6600.139334571862861No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6310.13321229522040196No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6240.13173450430670494No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6160.13004560040533694No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6010.1268789055902719No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5990.1264566796149299No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5950.1256122276642459No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5730.12096774193548387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5230.1104120925519338No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5170.1091454146259078No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5050.10661205877385577No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4920.10386758993413275No Hit

[OK]Adapter Content

Adapter graph