FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422723
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15660.3704553572907081No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13500.3193580666299208No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12660.2994868980396146No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12410.29357285976869013No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12020.284346960066048No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11580.2739382527092209No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11480.27157263740085114No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC11370.2689704605616444No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8550.20226010886561652No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8500.2010773012114316No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8460.20013105508808365No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7660.18120613262112542No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5960.1409906723788391No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5740.13578631870042557No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4950.11709795776430429No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4910.11615171164095638No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4550.10763549653082516No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4440.1050333196916184No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4260.10077521213655279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)