FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449943
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22560.5013968436001893No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14120.31381752799799084No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8070.1793560517665571No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7450.16557652858250935No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7250.16113152110378426No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5790.12868296650909117No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5130.11401444182929839No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4500.10001266827131437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)