FastQCFastQC Report
Sun 21 May 2023
EGAF00007944363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences299173
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13050.43620246479461716No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9620.3215530813275262No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8310.27776570746691714No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6440.2152600669178034No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5780.1931992526063515No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4880.16311632399982617No Hit
TTTACGGGTCGGCGGCGGCGGCTGCTGTTGACGCTGCTGCAGGT4870.16278206923753147No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4700.15709973827852114No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4690.15676548351622638No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4610.1540914454178686No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4250.14205827397525847No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4180.1397184906391954No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4100.13704445254083758No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4080.1363759430162481No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT3960.13236488586871142No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG3930.13136212158182725No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG3840.1283538287211747No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT3740.12501128109822746No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA3460.11565214775397512No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG3360.11230960013102785No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA3280.10963556203267007No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG3270.10930130727037533No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA3260.10896705250808061No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC3250.10863279774578588No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG3120.10428748583595446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)