FastQCFastQC Report
Sun 21 May 2023
EGAF00007944364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences299173
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15620.5221059387043617No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12800.42784609573724897No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9670.32322435513899983No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8980.30016077654066375No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6880.22996727645877135No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6500.21726559549157176No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6470.2162628312046876No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5820.19453627165553042No Hit
CCAGCGGCTGAAGCTCACGCCGCGCGTTCCG5560.18584564783586754No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5350.1788262978276783No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5050.16879865495883653No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4920.16445334304900508No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4700.15709973827852114No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4420.1477406049342688No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4370.14606933112279516No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4320.14439805731132155No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4280.14306103826214264No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4230.141389764450669No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4060.13570743349165867No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4030.1347046692047745No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3910.13069361205723778No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3830.12801957395887997No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC3770.12601404538511163No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG3710.12400851681134326No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT3640.12166873347528018No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG3500.11698916680315402No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG3490.1166549120408593No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA3430.11464938346709094No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA3410.11398087394250149No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG3320.11097258108184896No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC3260.10896705250808061No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA3210.10729577869660697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)