FastQCFastQC Report
Sun 21 May 2023
EGAF00007944366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453278
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22610.4988108842696976No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9070.20009795313251472No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7100.15663676595819784No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5470.12067649433680876No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5120.11295496362055957No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4840.10677773904756022No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4720.10413035708770335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)