FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433899
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36360.8379830329177989No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29900.6891004588625463No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25690.5920732705076527No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA17410.4012454511303322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12250.2823237665908426No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12010.27679252544947097No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11710.26987847402275644No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11650.2684956637374135No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11490.2648081696431658No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8640.19912468108937795No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7980.18391376795060602No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7430.17123800700162942No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7180.16547629747936732No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6400.1474997637699096No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6120.14104664910497605No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6110.14081618072408555No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5570.12837088815599945No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5430.12514433082353266No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5170.11915215292038009No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4840.11154669635099412No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4550.10486311330517009No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4510.10394123978160817No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4390.10117561921092237No Hit

[OK]Adapter Content

Adapter graph