FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491923
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18530.37668496898904913No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15310.311227570168502No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11050.22462865123200176No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8830.17949963713833264No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7550.1534793046879288No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6850.13924943537911422No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6650.13518375843373862No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6020.12237687605580548No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5990.12176702451399914No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5970.12136045681946157No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5580.11343238677597918No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5350.10875685828879723No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5230.10631745212157187No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5080.10326819441254018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)