FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007944376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491923
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41250.8385458699837169No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11040.22442536738473298No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9290.1888506941126965No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9260.18824084257089016No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8430.1713682832475814No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8130.16526976782951802No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7500.1524628854515849No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7120.14473809925537126No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7090.14412824771356492No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6920.14067242230999566No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6590.13396405535012593No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.12745897223752498No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6260.1272556883902562No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5950.12095388912492402No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5280.10733387135791576No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5280.10733387135791576No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5010.10184520748165872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)