FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462626
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62731.3559549182276829No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA60761.3133719246216167No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA33030.7139676542174457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA29830.6447973092735817No Hit
GAATGCGACAACTATCGCCAGGAATACGATA13800.29829711257041325No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13260.2866246168611362No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13060.2823014703021447No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10870.23496301548118784No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9300.20102631499310458No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9240.19972937102540717No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8620.1863276166925335No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8090.17487127831120602No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7880.17033197442426495No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7680.16600882786527346No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7270.1571463774193409No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7030.1519586015485511No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6920.14958087094110578No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6360.1374760605759296No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6030.1303428687535936No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5910.12774898081819872No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5830.1260197221946021No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5700.12320967693125766No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5620.12148041830766104No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5500.11888653037226615No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5350.11564417045302253No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5240.11326643984557722No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5160.11153718122198061No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4980.10764634931888827No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4880.10548477603939252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)