FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460224
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTCCAACATGGACATCGATGGTATTAACA22980.49932206925323325No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21970.47737623418161584No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15900.34548393825615353No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9500.2064212209706578No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8220.17860867751355863No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7900.17165554164928382No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7790.16926540119593936No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6890.14970970657766652No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5410.11755145320539563No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG4720.10255875399805313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)