FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492227
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14020.284827935078734No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11250.22855308627929793No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8670.17613824515924562No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8350.16963717959396782No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7170.1456645003220059No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6500.1320528942947055No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5960.12108234615329919No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5740.1166128635771707No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5350.10868968991948837No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5270.1070644235281689No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5210.10584547373467934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)