FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492227
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27790.5645769126845948No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13130.26674684647530505No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11390.231397302464107No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11300.22956887777387264No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8630.1753256119635859No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7640.1552129403710077No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6610.13428763558276974No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6200.12595814532725755No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.12331708744136344No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6000.12189497934895892No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5410.10990863971297796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)