FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474475
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11150.23499657516202116No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9730.20506876020865167No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9600.2023288898255967No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8410.17724853785763212No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6820.14373781548026765No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6690.1409979450972127No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6570.13846883397439275No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6460.1361504821118078No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5590.11781442647136309No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5330.11233468570525316No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4960.1045365930765583No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4840.10200748195373835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)