FastQCFastQC Report
Sun 21 May 2023
EGAF00007944386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474475
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13740.2895832235628853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12020.2533326308024659No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11520.24279466779071604No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10490.22108646398651138No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8930.18820801938985193No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7720.16270614890141735No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7570.15954475999789242No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7480.15764792665577743No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6910.1456346488223826No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6750.1422625006586227No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5620.11844670425206807No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5590.11781442647136309No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5290.11149164866431319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)