FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455249
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37120.8153779579966128No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16710.36705187710461745No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10120.22229593035899037No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9850.2163651100826141No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9710.21328986993930793No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8890.1952777490999431No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8830.19395978903852618No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8120.17836392831175907No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7820.17177412800467437No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7470.1640860276464089No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6330.13904478647948704No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6320.13882512646925088No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6070.13333362621334696No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4660.10236156477004893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)