FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472923
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28820.6094015304817063No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27200.5751464826197922No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24560.519323441659636No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA21810.4611744406594731No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21350.45144769867399137No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21040.4448927203794275No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17110.36179251167737664No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16660.35227722060462274No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16260.34381918409550816No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14860.3142160563136071No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12270.25945026991709014No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT11250.2378822768188479No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9780.20679899264785176No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9490.20066691617874366No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9260.1958035451860028No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8830.1867111559387046No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8720.18438519589869812No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8070.17064088657138687No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC7810.1651431628404624No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA7690.16260575188772802No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7660.16197139914954445No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7230.15287900990224623No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7140.15097595168769548No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6120.12940795858945325No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5590.11820106021487643No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5540.11714380565123708No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5520.11672090382578136No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5330.11270333648395195No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5180.10953157279303397No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5170.1093201218803061No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5160.10910867096757823No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4990.10551400545120453No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4870.10297659449847016No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4820.10191933993483084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)