FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440240
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17850.40546065782300567No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14290.32459567508631654No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12350.28052880247137923No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12310.279620207159731No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12250.2782573141922588No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12190.27689442122478647No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10420.236689078684354No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9400.2135198982373251No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7360.16718153734326732No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6200.14083227330546974No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6040.13719789205887697No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6030.13697074323096492No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT5470.12425040886789025No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG5330.12107032527712157No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5250.11925313465382519No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4900.1113029256769035No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT4870.11062147919316735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)