FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440240
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37880.8604397601308378No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33700.7654915500636017No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25660.5828638924223151No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18000.40886789024168635No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13550.307786661820825No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12930.293703434490278No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12270.27871161184808285No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12010.2728057423223696No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7330.16650009085953116No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG5940.1349264037797565No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5840.13265491550063602No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5540.1258404506632746No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5410.12288751590041795No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5170.11743594403052879No Hit
GATGCAGCTTCCAACTCTGCAAACCGTCAGG5070.11516445575140831No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4920.1117572233327276No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4450.10108122842086135No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4410.10017263310921316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)