FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461178
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42480.9211193942469067No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13210.28644037660079186No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9840.2133666393453287No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8860.19211670981703377No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8790.19059885770786983No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7580.16436169982089344No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7490.16241017568053984No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7280.15785661935304807No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6110.13248680552845105No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4970.1077674997506386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4960.10755066373504374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4800.1040812874855262No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4620.10017823920481896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)