FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476082
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48221.0128507273957008No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT32770.6883268008452326No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT29170.6127095752412399No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT26100.5482248856289462No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC23850.5009641196264509No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22890.48079952613205285No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA21900.46000478909095494No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20950.44005024344545685No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19750.41484450157745933No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC19160.4024516784923606No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC15830.3325057448086674No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13120.275582777756773No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12330.2589889976936746No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT11230.23588373431467688No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10880.2285320596031776No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT9620.2020660306417802No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8800.1848421070319819No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7870.1653076570842838No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7740.1625770350485841No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT7600.15963636516398436No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT7520.15795598237278452No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7090.1489239248700854No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6860.1440928243453859No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6310.132540192655887No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6220.13064976201578718No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6020.1264488050377876No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5510.11573636474388865No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5490.11531626904608869No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5300.11132535991698908No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5040.10586411584558963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)