FastQCFastQC Report
Sun 21 May 2023
EGAF00007944404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466684
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23120.4954101704793822No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21350.45748300777399703No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10990.23549125318202466No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10780.2309914203186739No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9090.1947784796564699No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.18856442474993784No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5470.11720993220251819No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4770.10221048932468223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)