FastQCFastQC Report
Sun 21 May 2023
EGAF00007944405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443540
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9960.22455697344095235No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9840.22185146773684447No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9230.20809848040762952No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8440.19028723452225277No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7850.17698516481038915No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6430.14497001397844614No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4860.10957298101636831No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4530.1021328403300717No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4490.10123100509536907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)