FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458949
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14930.32530847654096645No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13000.2832558737463204No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7100.15470128489222112No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6820.1486003891499927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5910.12877247798775027No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5850.12746514318584418No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5050.11003401249376292No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4860.10589411895439362No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4610.10044689061311823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)