FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458949
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40910.8913844457663053No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32540.709011240900405No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11490.25035461456501706No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9360.2039442290973507No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7180.15644439796142925No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6210.13530915199728075No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5520.12027480177536065No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5230.1139560168994812No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5030.1095982342264609No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4810.10480467328613854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)