FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485436
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT90901.8725434454799395No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23130.47647887672113315No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14110.2906665348264241No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13810.28448652345520314No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13390.2758345075354939No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12660.26079647986552296No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11580.2385484389291276No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11530.23751843703392414No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8830.18189833469293584No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8490.17489432180555214No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8460.17427632066843005No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7860.1619162979259882No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7460.1536762827643603No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7110.14646626949793587No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6920.14255226229616264No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6380.13142824182796495No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5750.11845021794840102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)