FastQCFastQC Report
Sun 21 May 2023
EGAF00007944411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414729
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG15210.3667455133352141No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12550.30260724473089656No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11050.26643904814951447No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG10030.24184467447417468No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8980.21652693686720725No Hit
CGGACCGGACGGCATGTCTTTGGCTGGTGCCTGTGCAGGCGGAC8740.21074002541418613No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8060.19434377629729294No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6950.16757931082707023No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6830.16468585510055964No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6600.15914006495808106No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG6410.15455876005777267No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6360.15335315350505993No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6210.14973633384692173No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5530.13334008473002854No Hit
TTCCGGCGCGGAGGTCGGAGAATCGGAGCTGGTGTCTTCGGTCA4980.12007841265018844No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4950.11935504871856079No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4870.11742607823422041No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG4330.10440552746492288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)