FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411746
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11430.27759832518105826No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT11020.2676407299645898No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9530.23145337173888758No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9420.2287818218027619No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8560.20789515866577937No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8430.20473787237763086No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6070.14742098283893468No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5770.14013493755859194No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5750.1396492012065691No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5630.136734783094432No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5330.12944873781408928No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5290.12847726511004356No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5030.12216269253374652No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4970.12070548347767798No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4920.11949114259762086No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4810.1168195926614952No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4310.10467618386092398No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG4290.10419044750890114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)