FastQCFastQC Report
Sun 21 May 2023
EGAF00007944414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411746
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14410.34997304163246273No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12260.29775638379000646No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10400.2525829030518815No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9880.2399537578992874No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9730.23631073525911603No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9670.2348535262030475No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9230.2241673264585448No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7740.18797996823284258No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6540.15883578711147162No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6080.1476638510149461No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5980.14523516925483185No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5910.1435350920227519No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5910.1435350920227519No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5380.1306630786941464No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5030.12216269253374652No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4900.11900540624559801No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4790.11633385630947235No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4730.1148766472534038No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4600.11171936096525528No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4480.10880494285311819No Hit

[OK]Adapter Content

Adapter graph