FastQCFastQC Report
Wed 31 May 2023
EGAF00007944416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416395
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37850.9089926632164171No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22450.5391515267954706No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10180.2444794005691711No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8730.20965669616590019No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7140.1714717996133479No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5050.12127907395621945No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4730.1135940633292907No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4190.10062560789634843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)