FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432113
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA59411.3748718506501771No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37130.8592659790378906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA29280.6776005350452312No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25260.5845693140451688No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG12010.27793655826138075No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11080.25641441011957516No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11050.25572014727629117No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10760.24900893979121203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10700.24762041410464394No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8420.19485643801505625No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8080.18698812579117036No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7920.18328539062698876No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7230.16731734523145567No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5950.13769546391800294No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5830.13491841254486672No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5600.1295957307463557No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5440.1258929955821741No Hit
ACTATCTACCAGTGCTATAACGCAGTTAAAA5350.12381020705232197No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5160.11941320904485632No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5110.11825610430604956No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4890.1131648434552999No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4710.1089992663955956No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4660.10784216165678885No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4580.10599079407469804No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4420.10228805891051647No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4380.10136237511947105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)