FastQCFastQC Report
Sun 21 May 2023
EGAF00007944420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385003
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33350.866227016412859No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29410.7638901515053129No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7010.1820765032999743No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6060.15740137089840858No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5880.1527260826539014No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5540.14389498263649894No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5070.13168728555361908No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4930.12805095025233568No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4830.12545356789427617No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4820.12519382965847017No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4250.11038875021753076No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG4020.1044147707939938No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA3870.1005186972569045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)