FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007944422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380984
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32700.8583037607878546No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16520.4336140100371669No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG14700.38584297503307224No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC13810.36248241395964137No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG12720.3338722886000462No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12640.3317724628855805No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11700.30709951074060854No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11300.29660038216828005No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10780.282951515024253No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC10250.2690401696659177No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9330.2448921739495622No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9060.23780526216324047No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8370.2196942653759738No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8330.21864435251874093No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG8250.21654452680427522No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8230.21601957037565883No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8060.2115574407324192No Hit
AAAGCAAAAGTAGTTGCCGAAAAAGGTTTCA7690.20184574680301537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7290.19134661823068685No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7130.18714696680175547No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6860.1800600550154337No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6300.16536127501417383No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6230.16352392751401634No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6170.16194905822816708No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6060.15906179787077673No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5510.14462549608382505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5410.14200071394074293No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5390.1414757575121265No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5190.13622619322596224No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5180.13596371501165405No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4860.12756441215379125No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC4660.12231484786762699No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4650.12205236965331877No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC4420.11601537072422989No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4410.11575289250992167No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC4360.11444050143838062No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4160.10919093715221635No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA3930.10315393822312748No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3920.10289146000881925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)