FastQCFastQC Report
Wed 31 May 2023
EGAF00007944424

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944424
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441023
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39050.8854413488638915No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11030.2501003349031683No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9330.2115535924430245No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8760.1986290964416822No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7970.1807161984749095No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7150.16212306387648717No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6750.1530532421211592No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6720.1523730054895096No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5290.11994839271421219No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4880.11065182541500104No Hit
TTCGGTGCACTGTACAGCGGTCGTATCGCTG4700.10657040562510345No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4430.10044827594025708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)