FastQCFastQC Report
Sun 21 May 2023
EGAF00007944428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences378721
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32020.8454772774681099No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20100.530733706343192No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18150.4792446154293002No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13730.3625360093578122No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12020.3173840373256302No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11770.3107828718238492No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11000.29045128207836374No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10920.28833890911779386No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10260.270911832193092No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG10230.2701196923328783No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9930.2621982937307411No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9040.23869814454440075No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7950.20991706295663562No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7930.20938896971649315No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7880.20806873661613692No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7110.1877371468706515No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5850.15446727274167527No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5780.1526189464011766No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5510.14548968765925313No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5410.1428492214585407No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5130.135455916096546No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5010.13228735665569114No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4800.1267423776341951No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4500.11882097903205789No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4340.11459623311091806No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4270.11274790677041939No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4230.11169172029013442No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4130.10905125408942204No Hit
TCTCTGCCGCAGAAATCTCACGGTCGCACTC4100.1082591142292083No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT3820.1008658088672136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)