FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400203
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53231.330074986944126No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21380.5342288788439867No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14640.365814349217772No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9870.24662483789476838No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9750.2436263596224916No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9460.23638003713115593No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9160.2288838414504639No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8230.20564563484031856No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8140.20339677613611093No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7570.18915400434279603No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7300.1824074282301732No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7170.17915907676853995No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6420.16041858756680985No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6410.16016871437745345No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4780.11943938451235997No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4650.11619103305072676No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4610.11519154029330114No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4550.11369230115716274No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4510.11269280839973712No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4350.1086948373700347No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4260.10644597866582708No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4190.10469686634033229No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4050.10119864168934266No Hit

[OK]Adapter Content

Adapter graph