FastQCFastQC Report
Sun 21 May 2023
EGAF00007944436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478510
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68941.4407222419594157No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19940.41671020459342545No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13440.2808718731061002No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12910.2697958245386721No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12700.2654072015213893No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12650.26436229127917915No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11370.23761258907859817No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8930.18662096925874067No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8360.17470899249754446No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7950.16614072851142087No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7180.1500491107813839No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6980.14586946981254312No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6320.13207665461536852No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6110.12768803159808573No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5690.1189107855635201No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5610.11723892917598379No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5190.10846168314141814No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5190.10846168314141814No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4820.10072934734906272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)