FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007944440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007944440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493033
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29530.5989457095164016No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26390.5352582889989108No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG25300.5131502353797819No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18250.3701577784854158No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16180.32817275922707No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11520.23365575935079397No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11060.22432575507116154No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11060.22432575507116154No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10760.2182409696714013No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10710.21722683877144125No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10570.21438727225155316No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9980.20242052763202464No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9750.19775552549220846No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9440.19146791391245616No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9290.18842552121257602No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9120.1849774761527119No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9080.18416617143274383No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7790.15800159421377474No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7720.15658181095383067No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7650.15516202769388662No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7130.14461506633430216No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6990.14177549981441406No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6740.13670484531461383No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6500.13183701699480563No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6430.13041723373486155No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6390.12960592901489354No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6350.1287946242949255No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6250.1267663624950054No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6180.12534657923506135No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6170.12514375305506933No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6040.12250701271517322No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6030.12230418653518121No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5610.11378548697551685No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5600.11358266079552484No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5590.11337983461553282No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5500.11155439899560475No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5470.11094592045562875No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5230.10607809213582053No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC5170.10486113505586848No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG4980.10100743763602031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)